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fafbseg 3.2.2 documentation
fafbseg 3.2.2 documentation
  • Overview
  • Installation
  • Tutorials
    • FlyWire Setup: How to get your API token?
    • Introduction to FlyWire root IDs, materializations and datasets
      • fafbseg.flywire.locs_to_segments
      • fafbseg.flywire.locs_to_supervoxels
      • fafbseg.flywire.supervoxels_to_roots
      • fafbseg.flywire.is_latest_root
      • fafbseg.flywire.update_ids
      • fafbseg.flywire.find_common_time
      • fafbseg.flywire.find_mat_version
    • Downloading neuron meshes and skeletons
    • Working with annotations
    • Parsing and generating FlyWire URLs
    • Fetching connectivity
    • NBLASTing FlyWire neurons against Janelia hemibrain
    • Transforming data between FAFB14 and FlyWire
    • Mirroring FlyWire neurons
  • API Documentation
    • fafbseg.flywire.locs_to_segments
    • fafbseg.flywire.neuron_to_segments
    • fafbseg.flywire.locs_to_supervoxels
    • fafbseg.flywire.supervoxels_to_roots
    • fafbseg.flywire.skid_to_id
    • fafbseg.flywire.is_latest_root
    • fafbseg.flywire.update_ids
    • fafbseg.flywire.get_voxels
    • fafbseg.flywire.is_proofread
    • fafbseg.flywire.find_common_time
    • fafbseg.flywire.find_anchor_loc
    • fafbseg.flywire.get_segmentation_cutout
    • fafbseg.flywire.get_mesh_neuron
    • fafbseg.flywire.get_somas
    • fafbseg.flywire.get_skeletons
    • fafbseg.flywire.skeletonize_neuron
    • fafbseg.flywire.skeletonize_neuron_parallel
    • fafbseg.flywire.synapses.get_adjacency
    • fafbseg.flywire.synapses.get_connectivity
    • fafbseg.flywire.synapses.get_synapses
    • fafbseg.flywire.synapses.get_synapse_counts
    • fafbseg.flywire.synapses.get_transmitter_predictions
    • fafbseg.flywire.get_l2_info
    • fafbseg.flywire.get_l2_graph
    • fafbseg.flywire.get_l2_dotprops
    • fafbseg.flywire.get_l2_skeleton
    • fafbseg.flywire.get_edit_history
    • fafbseg.flywire.get_leaderboard
    • fafbseg.flywire.get_neuropil_volumes
    • fafbseg.flywire.get_lineage_graph
    • fafbseg.flywire.get_lr_position
    • fafbseg.flywire.get_voxels
    • fafbseg.flywire.search_annotations
    • fafbseg.flywire.search_community_annotations
    • fafbseg.flywire.get_hierarchical_annotations
    • fafbseg.flywire.NeuronCriteria
    • fafbseg.flywire.get_materialization_versions
    • fafbseg.flywire.create_cave_table
    • fafbseg.flywire.list_cave_tables
    • fafbseg.flywire.get_cave_table_info
    • fafbseg.flywire.get_cave_table
    • fafbseg.flywire.delete_annotations
    • fafbseg.flywire.upload_annotations
    • fafbseg.flywire.set_default_dataset
    • fafbseg.flywire.set_default_annotation_version
    • fafbseg.flywire.get_user_information
    • fafbseg.flywire.encode_url
    • fafbseg.flywire.decode_url
    • fafbseg.google.locs_to_segments
    • fafbseg.google.segments_to_neuron
    • fafbseg.google.segments_to_skids
    • fafbseg.google.neuron_to_segments
    • fafbseg.google.find_autoseg_fragments
    • fafbseg.google.find_fragments
    • fafbseg.google.find_missed_branches
    • fafbseg.google.get_mesh
    • fafbseg.google.autoreview_edges
    • fafbseg.google.test_edges
    • fafbseg.xform.flywire_to_fafb14
    • fafbseg.xform.fafb14_to_flywire

Development

  • Source code
  • Changelog
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All modules for which code is available

  • fafbseg.flywire.annotations
  • fafbseg.flywire.l2
  • fafbseg.flywire.meshes
  • fafbseg.flywire.neuroglancer
  • fafbseg.flywire.segmentation
  • fafbseg.flywire.skeletonize
  • fafbseg.flywire.synapses
  • fafbseg.flywire.utils
  • fafbseg.google.meshes
  • fafbseg.google.segmentation
  • fafbseg.xform.xform
Copyright © 2019, Philipp Schlegel
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