fafbseg.xform.fafb14_to_flywire

fafbseg.xform.fafb14_to_flywire(x, coordinates='nm', mip=4, inplace=False, on_fail='warn')[source]

Transform neurons/coordinates from FAFB v14 to flywire.

This uses a service hosted by Eric Perlman.

Parameters:

  • x (CatmaidNeuron/List | np.ndarray (N, 3)) – Data to transform.

  • mip (int) – Resolution of mapping. Lower = more precise but much slower. Currently only mip 4 available!

  • coordinates ("nm" | "voxel") – Units of the provided data in x.

  • inplace (bool) – If True will modify Neuron object(s) in place. If False work with a copy.

  • on_fail ("warn" | "ignore" | "raise") – What to do if points failed to xform.

Returns:

Returns same data type as input. Coordinates are returned in the same coordinate space (voxels or nm) as the input.

Return type:

xformed data