fafbseg.google.segments_to_neuron

fafbseg.google.segments_to_neuron(seg_ids, autoseg_instance, name_pattern='Google: {id}', verbose=True, raise_none_found=True)[source]

Retrieve autoseg neurons of given segmentation ID(s).

If a given segmentation ID has been merged into another fragment, will try retrieving by annotation.

Parameters:

  • seg_ids (int | list of int) – Segmentation ID(s) of autoseg skeletons to retrieve.

  • autoseg_instance (pymaid.CatmaidInstance) – Instance with autoseg skeletons.

  • name_pattern (str, optional) – Segmentation IDs are encoded in the name. Use parameter this to define that pattern.

  • raise_none_found (bool, optional) – If True and none of the requested segments were found, will raise ValueError

Returns:

Neurons representing given segmentation IDs. Each neuron has the list of segmentation IDs associated with it as .seg_ids attribute.

Return type:

CatmaidNeuronList