fafbseg.flywire.neuron_to_segments#

fafbseg.flywire.neuron_to_segments(x, short=False, coordinates='voxel', *, dataset=None)[source]#

Get root IDs overlapping with a given neuron.

Parameters:

x (Neuron/List) – Neurons for which to return root IDs. Neurons must be in FlyWire (FAFB14.1) space.
short (bool) – If True will only return the top hit for each neuron (including a confidence score).
coordinates ("voxel" | "nm") – Units the neuron(s) are in. “voxel” is assumed to be 4x4x40 (x/y/z) nanometers.
dataset ("public" | "production" | "sandbox" | "flat_630", optional) – Against which FlyWire dataset to query. If None will fall back to the default dataset (see set_default_dataset()).

Returns:

overlap_matrix (pandas.DataFrame) – DataFrame of root IDs (rows) and IDs (columns) with overlap in nodes as values:
```
     id     id1   id2
root_id
10336680915   5     0
10336682132   0     1
```

summary (pandas.DataFrame) –

If short=True: DataFrame of top hits only:

id            match   confidence
12345   103366809155     0.87665
412314  103366821325     0.65233