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fafbseg.xform.fafb14_to_flywire

fafbseg.xform.fafb14_to_flywire(x, coordinates='nm', mip=4, inplace=False, on_fail='warn')

Transform neurons/coordinates from FAFB v14 to flywire.

This uses a service hosted by Eric Perlman.

Parameters

• x (CatmaidNeuron/List | np.ndarray (N, 3)) – Data to transform.

• mip (int) – Resolution of mapping. Lower = more precise but much slower. Currently only mip 4 available!

• coordinates ("nm" | "pixel") – Units of the provided data in x.

• inplace (bool) – If True will modify Neuron object(s) in place. If False work with a copy.

• on_fail ("warn" | "ignore" | "raise") – What to do if points failed to xform.

Returns

Returns same data type as input. Coordinates are returned in pixel (at 4x4x40 nm).

Return type

xformed data

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