Table Of Contents

fafbseg.google.segments_to_skids

fafbseg.google.segments_to_skids(seg_ids, autoseg_instance, name_pattern='Google: {id}', merge_annotation_pattern='Merged: {name}', verbose=True)

Retrieve skeleton IDs of neurons corresponding to given segmentation ID(s).

If a given segmentation ID has been merged into another fragment, will try retrieving by annotation.

Parameters

• seg_ids (int | list of int) – Segmentation ID(s) of autoseg skeletons to retrieve.

• autoseg_instance (pymaid.CatmaidInstance) – Instance with autoseg skeletons.

• name_pattern (str, optional) – Segmentation IDs are encoded in the name. Use this parameter to define that pattern.

• merge_annotation_pattern (str, optional) – When neurons are merged, a reference to the loosing skeleton’s name is kept as annotation. Use this parameter to define that pattern.

Returns

Dictionary mapping segmentation ID to skeleton ID. Will be None if no skeleton found.

Return type

Dict

arrow_back

Previous

fafbseg.google.segments_to_neuron

arrow_forward

Next

fafbseg.google.neuron_to_segments